type: cnv_collection
table:
  filename: SFARI_gene_CNV.txt 

  chrom:
    column_name: chrom
  pos_begin:
    column_name: pos_beg
  pos_end:
    column_name: pos_end

scores:
- id: deletion_duplication 
  column_name: "deletion_duplication"
  type: str
  desc: duplication or deletion
- id: cnv_name 
  column_name: "CNV_name"
  type: str
  desc: "Handy name to refer to the CNV."
  histogram:
    type: categorical
    label_rotation: 90



meta:
  summary: |
     SFARI_Gene CNV collection
  description: |
     [SFARI_Gene CNV collection](https://gene.sfari.org/database/cnv/) provides information about copy number variations (CNVs) associated with autism spectrum disorder (ASD).

     Downloaded on 12/11/2024 from [https://gene.sfari.org//wp-content/themes/sfari-gene/utilities/download-csv.php?api-endpoint=cnvs](https://gene.sfari.org//wp-content/themes/sfari-gene/utilities/download-csv.php?api-endpoint=cnvs)

     DataPrep.py converts raw file to GRR format.