Resource

Id	hg38/scores/CADD_v1.7content_copy
Type	allele_score
Version	0
Summary	CADD (Combined Annotation Dependent Depletion score) predicts the potential impact of a SNP
Description
Labels	reference_genome: hg38/genomes/GRCh38-hg38

Scores (2)

ID	Type	Default annotation	Description	Histogram	Range	Summary
cadd_raw	float	cadd_raw	CADD raw score for functional prediction of a SNP. The larger the score the more likely the SNP has damaging effect Small values desc: less damaging Large values desc: more damaging		[-28.4, 25.5]	n 8,812,917,339 mean 0.36 sd 0.639
cadd_phred	float	cadd_phred	CADD phred-like score. This is phred-like rank score based on whole genome CADD raw scores. The larger the score the more likely the SNP has damaging effect. Small values desc: less damaging Large values desc: more damaging		[0, 99]	n 8,812,917,339 mean 4.35 sd 4.35

n counts alleles; sd is the population standard deviation.

Chromosome	Alleles	substitution %	insertion %	deletion %	complex %	other %
all chromosomes	8812917339	100.00%	0.00%	0.00%	0.00%	0.00%
chr1	691443036	100.00%	0.00%	0.00%	0.00%	0.00%
chr2	721644684	100.00%	0.00%	0.00%	0.00%	0.00%
chr3	594300405	100.00%	0.00%	0.00%	0.00%	0.00%
chr4	569258001	100.00%	0.00%	0.00%	0.00%	0.00%
chr5	543796134	100.00%	0.00%	0.00%	0.00%	0.00%
chr6	510235566	100.00%	0.00%	0.00%	0.00%	0.00%
chr7	476910393	100.00%	0.00%	0.00%	0.00%	0.00%
chr8	434304408	100.00%	0.00%	0.00%	0.00%	0.00%
chr9	365371650	100.00%	0.00%	0.00%	0.00%	0.00%
chr10	399788886	100.00%	0.00%	0.00%	0.00%	0.00%
chr11	403601226	100.00%	0.00%	0.00%	0.00%	0.00%
chr12	399413448	100.00%	0.00%	0.00%	0.00%	0.00%
chr13	293949375	100.00%	0.00%	0.00%	0.00%	0.00%
chr14	271704447	100.00%	0.00%	0.00%	0.00%	0.00%
chr15	253923975	100.00%	0.00%	0.00%	0.00%	0.00%
chr16	245417829	100.00%	0.00%	0.00%	0.00%	0.00%
chr17	248760612	100.00%	0.00%	0.00%	0.00%	0.00%
chr18	240268815	100.00%	0.00%	0.00%	0.00%	0.00%
chr19	175322274	100.00%	0.00%	0.00%	0.00%	0.00%
chr20	191832771	100.00%	0.00%	0.00%	0.00%	0.00%
chr21	120265857	100.00%	0.00%	0.00%	0.00%	0.00%
chr22	117479331	100.00%	0.00%	0.00%	0.00%	0.00%
chrX	464679087	100.00%	0.00%	0.00%	0.00%	0.00%
chrY	79245129	100.00%	0.00%	0.00%	0.00%	0.00%

ref → alt	A	C	G	T
A	0 0.00%	867148869 9.84%	867148869 9.84%	867148869 9.84%
C	599038716 6.80%	0 0.00%	599038716 6.80%	599038716 6.80%
G	601512956 6.83%	601512956 6.83%	0 0.00%	601512956 6.83%
T	869938572 9.87%	869938572 9.87%	869938572 9.87%	0 0.00%

ts/tv

0.50

2,937,639,113 transitions / 5,875,278,226 transversions

	alleles	min	max	mean	median
insertions	0
deletions	0

no insertions

no deletions

no complex alleles